Selecting data with same node name and merging data from XML file -


i'm trying select data uniprot xml file, , i'm able things want out, i'm having problems getting data out have more entries in same node. , preferably combine them together.

xml code:

<?xml version='1.0' encoding='utf-8'?> <?xml-stylesheet href="test_will7.xslt" type="text/xsl" ?>  <uniprot>  <entry dataset="swiss-prot" created="1993-04-01" modified="2012-11-28" version="118"> <accession>p30443</accession> <accession>o77964</accession> <name>1a01_human</name> <protein> <recommendedname> <fullname>hla class histocompatibility antigen, a-1 alpha chain</fullname> </recommendedname> </protein> <gene> <name type="primary">hla-a</name> <name type="synonym">hlaa</name> </gene> </comment> <comment type="subcellular location"> <subcellularlocation> <location>membrane</location> <topology>single-pass type membrane protein</topology> </subcellularlocation> </comment> <dbreference type="go" id="go:0031901"> <property type="term" value="c:early endosome membrane"/> <property type="evidence" value="tas:reactome"/> </dbreference> <dbreference type="go" id="go:0012507"> <property type="term" value="c:er golgi transport vesicle membrane"/> <property type="evidence" value="tas:reactome"/> </dbreference> <dbreference type="go" id="go:0000139"> <property type="term" value="c:golgi membrane"/> <property type="evidence" value="tas:reactome"/> </dbreference> </entry>  <entry dataset="swiss-prot" created="1986-07-21" modified="2012-11-28" version="151"> <accession>p01892</accession> <accession>o19619</accession> <accession>p06338</accession> <name>1a02_human</name> <protein> <recommendedname> <fullname>hla class histocompatibility antigen, a-2 alpha chain</fullname> </recommendedname> </protein> <gene> <name type="primary">hla-a</name> <name type="synonym">hlaa</name> </gene> <comment type="subcellular location"> <subcellularlocation> <location>membrane</location> <topology>single-pass type membrane protein</topology> </subcellularlocation> </comment> <dbreference type="go" id="go:0060333"> <property type="term" value="p:interferon-gamma-mediated signaling pathway"/> <property type="evidence" value="tas:reactome"/> </dbreference> </entry>  <entry dataset="swiss-prot" created="1987-08-13" modified="2012-11-28" version="124"> <accession>p04439</accession> <name>1a03_human</name> <protein> <recommendedname> <fullname>hla class histocompatibility antigen, a-3 alpha chain</fullname> </recommendedname> </protein> <gene> <name type="primary">hla-a</name> <name type="synonym">hlaa</name> </gene> <comment type="subcellular location"> <subcellularlocation> <location>membrane</location> <topology>single-pass type membrane protein</topology> </subcellularlocation> </comment> <dbreference type="go" id="go:0005887"> <property type="term" value="c:integral plasma membrane"/> <property type="evidence" value="nas:uniprotkb"/> </dbreference> <dbreference type="go" id="go:0019048"> <property type="term" value="p:virus-host interaction"/> <property type="evidence" value="iea:uniprotkb-kw"/> </dbreference> </entry> </uniprot>

and xslt file looks this. however, i'm still doing wrong, since doesn't work. maybe because of different levels?

<?xml version="1.0" ?> <xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/xsl/transform" version="1.0">    <xsl:template match="/">     <html>       <body>         <h2>my selection</h2>         <table border="1">           <tr bgcolor="#9acd32">             <th>name</th>             <th>genename</th>             <th>accessionnr</th>             <th>proteinname</th>             <th>subcellularlocation</th>             <th>tissuespecificity</th>             <th>goid</th>             <th>goname</th>           </tr>           <xsl:apply-templates/>         </table>       </body>     </html>   </xsl:template>    <xsl:template match="uniprot/entry">     <tr>       <xsl:apply-templates select="name|gene/name|accession|protein/recommendedname/fullname|comment[@type = 'subcellular location']/subcellularlocation/location|comment[@type = 'tissue specificty']/text|dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value"/>     </tr>   </xsl:template>        <xsl:template match="name|gene/name|accession|protein/recommendedname/fullname|comment[@type = 'subcellular location']/subcellularlocation/location|comment[@type = 'tissue specificty']/text|dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value">     <xsl:choose>       <xsl:when test="name()='dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value' , not(preceding-sibling::dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value)">         <td>           <xsl:value-of select="."/>           <xsl:if test="following-sibling::dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value">             <xsl:text>;</xsl:text>             <xsl:for-each select="following-sibling::dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value">               <xsl:value-of select="."/>               <xsl:if test="position()!=last()">                 <xsl:text>;</xsl:text>               </xsl:if>             </xsl:for-each>           </xsl:if>         </td>       </xsl:when>       <xsl:when test="name()='dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value' , preceding-sibling::dbreference[@type = 'go']/@id|dbreference[@type = 'go']/property[@type = 'term']/@value"/>       <xsl:otherwise>         <td>           <xsl:value-of select="."/>         </td>       </xsl:otherwise>     </xsl:choose>   </xsl:template>  </xsl:stylesheet>

my desired output:

name genename accessionnr proteinname subcellularlocation goid_ goname  1a01_human  hla-a  p30443  hla class histocompatibility antigen, a-1 alpha chain  membrane  go:0031901- c:early endosome membrane; go:0012507- c:er golgi transport vesicle membrane; go:0000139- c:golgi membrane 1a02_human  hla-a  p01892  hla class histocompatibility antigen, a-2 alpha chain  membrane  go:0060333-p:interferon-gamma-mediated signaling pathway  1a03_human  hla-a  p04439  hla class histocompatibility antigen, a-3 alpha chain  membrane  go:0005887- c:integral plasma membrane; go:0019048- p:virus-host interaction

if difficult, might this:

name genename accessionnr proteinname subcellularlocation goid  goname  1a01_human  hla-a  p30443  hla class histocompatibility antigen, a-1 alpha chain  membrane  go:0031901; go:0012507; go:0000139  c:early endosome membrane; c:er golgi transport vesicle membrane; c:golgi membrane 1a02_human  hla-a  p01892  hla class histocompatibility antigen, a-2 alpha chain  membrane  go:0060333  p:interferon-gamma-mediated signaling pathway  1a03_human  hla-a  p04439  hla class histocompatibility antigen, a-3 alpha chain  membrane  go:0005887; go:0019048  c:integral plasma membrane; p:virus-host interaction

i know lot, , pretty difficult distinguish everything. can read code, fixing bugs or writing new still difficult! (and i'm new xml) thank you!

i have deleted 'organism' xml input , created new xslt desired output:

xslt:

<?xml version="1.0" encoding="iso-8859-1"?> <xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/xsl/transform" version="1.0">   <xsl:template match="uniprot">     <html>       <body>         <h2>my selection</h2>         <table border="1">           <tr bgcolor="#9acd32">             <th>name</th>             <th>genename</th>             <th>accessionnr</th>             <th>proteinname</th>             <th>subcellularlocation</th>             <th>tissuespecificity</th>             <th>goid</th>             <th>goname</th>           </tr>           <xsl:for-each select="entry">             <tr>               <td><xsl:value-of select="name"/></td>               <td><xsl:value-of select="gene/name"/></td>               <td><xsl:value-of select="accession"/></td>               <td><xsl:value-of select="protein/recommendedname/fullname"/></td>               <td><xsl:value-of select="comment[@type = 'subcellular location']/subcellularlocation/location"/></td>               <td><xsl:value-of select="comment[@type = 'tissue specificty']"/></td>               <td>                 <xsl:for-each select="dbreference[@type = 'go']">                   <xsl:value-of select="concat(@id,'- ',property[@type = 'term']/@value,'; ')"/>                 </xsl:for-each>               </td>             </tr>           </xsl:for-each>         </table>       </body>     </html>   </xsl:template> </xsl:stylesheet>

output:

<html>    <body>       <h2>my selection</h2>       <table border="1">          <tr bgcolor="#9acd32">             <th>name</th>             <th>genename</th>             <th>accessionnr</th>             <th>proteinname</th>             <th>subcellularlocation</th>             <th>tissuespecificity</th>             <th>goid</th>             <th>goname</th>          </tr>          <tr>             <td>1a01_human</td>             <td>hla-a</td>             <td>p30443</td>             <td>hla class histocompatibility antigen, a-1 alpha chain</td>             <td>membrane</td>             <td></td>             <td>go:0031901- c:early endosome membrane; go:0012507- c:er golgi transport vesicle membrane; go:0000139- c:golgi membrane; </td>          </tr>          <tr>             <td>1a02_human</td>             <td>hla-a</td>             <td>p01892</td>             <td>hla class histocompatibility antigen, a-2 alpha chain</td>             <td>membrane</td>             <td></td>             <td>go:0060333- p:interferon-gamma-mediated signaling pathway; </td>          </tr>          <tr>             <td>1a03_human</td>             <td>hla-a</td>             <td>p04439</td>             <td>hla class histocompatibility antigen, a-3 alpha chain</td>             <td>membrane</td>             <td></td>             <td>go:0005887- c:integral plasma membrane; go:0019048- p:virus-host interaction; </td>          </tr>       </table>    </body> </html>

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